PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880063
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 84aa    MW: 9177.85 Da    PI: 9.9592
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880063genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.71.1e-20483172
     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardP 72
               +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a     ++ r+++++sl+yeA+ r+ +P
  462880063  4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgpgADHLRPAVFRSLLYEACGRIVNP 83
               6***************************************************986656778******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.64384IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-16483IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGPG  60
ADHLRPAVFR SLLYEACGRI VNPR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-82EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-82KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465135.16e-50LOB domain-containing protein 41
SwissprotQ9M8862e-44LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1Z5S8Y31e-48A0A1Z5S8Y3_SORBI; Uncharacterized protein
STRINGSb01g032580.12e-49(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-38LOB domain-containing protein 41