PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879102
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 181aa    MW: 20476.1 Da    PI: 7.7394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879102genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06425426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               +lC+f++  G C  G+ C F+H+
  462879102  4 VLCKFYMH-GACLKGEYCEFSHD 25
               69**8888.*************5 PP

2zf-CCCH29.71.1e-093353526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C f+++ G C+yG+rC++ H+
  462879102 33 VCTFYQK-GACSYGSRCRYDHV 53
               5******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.305527IPR000571Zinc finger, CCCH-type
PfamPF156634.0E-8660No hitNo description
PROSITE profilePS5010314.2772855IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-43054IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53052IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-53352IPR000571Zinc finger, CCCH-type
SMARTSM003560.23117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324121145IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDGVLCKFYM HGACLKGEYC EFSHDWSDQA NNVCTFYQKG ACSYGSRCRY DHVKVSRNPT  60
VMPPPPSSSS ARRVASTSLQ LLGSSHPPHM VHQTDTSNET QQVPMNMLKL AQQFSFIWSI  120
DCKYFDFGTG SCPFGTSCFY RHAYRDGRLE EVVLRHLDAD DGSTVIAKNI RLSDFLSRLH  180
L
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.12e-55E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA079e-43C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLK3XXQ26e-54K3XXQ2_SETIT; Uncharacterized protein
STRINGSi006712m1e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.28e-25C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]