PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878828
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 264aa    MW: 29115.2 Da    PI: 8.3206
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878828genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.8e-12128184155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  462878828 128 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 184
                57*******************5444.2455536655.779999**************98 PP

2AP223.41.5e-07227259136
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                s y+GV+++++ grW A+I  +     +k  +lg+f
  462878828 227 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 259
                57****************988532...5*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-9128184IPR001471AP2/ERF domain
CDDcd000181.45E-18128194No hitNo description
SuperFamilySSF541711.24E-15128194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-13129193IPR001471AP2/ERF domain
SMARTSM003802.5E-23129198IPR001471AP2/ERF domain
PROSITE profilePS5103217.477129192IPR001471AP2/ERF domain
PRINTSPR003672.1E-5130141IPR001471AP2/ERF domain
PRINTSPR003672.1E-5174194IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-6227261IPR016177DNA-binding domain
PROSITE profilePS510329.466228264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-5228261IPR001471AP2/ERF domain
SMARTSM003800.012228263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDMDMSSTYP HHWLSFSLSN NYQHGLLEAF SNSSSAPQLG EEGAVEETPK MEDFLGGVGG  60
TGAPPPGPTE DQLGCGGELG SIAAGFLRQH PANGTPENPG AVTIAMGTDV AESDQARRPA  120
ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL  180
KYWGPTTTTN FPVSNYEKEL EEMKSMTRQE FIASLRRKSS GFSRGASIYR GVTRHHQHGR  240
WQARIGRVAG NKDLYLGTFS KCSC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878828
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400031e-155BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
GenBankKJ7274851e-155KJ727485.1 Zea mays clone pUT5344 AP2-EREBP transcription factor (EREB152) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.11e-166AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ32e-96AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5V5G51e-175A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5
STRINGSi008325m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.14e-98AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]