PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 261aa    MW: 29421.1 Da    PI: 7.3048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877788genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.9e-073270143
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43
               +++ ++erE+r Rd+ N+ feeL ++l ++     + + Ka +
  462877788 32 KKVHKSEREKRKRDKQNDLFEELGKMLEPD----RQNNGKACV 70
               678899*********************996....344445555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-928100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1228100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-42985No hitNo description
PROSITE profilePS5088811.5663181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-53279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVPRDRAHGV AAATPAPTER LLQGKCEKKA PKKVHKSERE KRKRDKQNDL FEELGKMLEP  60
DRQNNGKACV LSDTTRILKD LVSQVDSLRK ENSALKNESH YVALERNELF DENNVIRNEI  120
LGLQNELRMR LEVNPIWTHG TTRSNLAVPH PATTVFALQH SPHTPVITTM ALPLQQPAVH  180
DQSYVAPRRE LQLFPETAET EDNERSQDQG ISNHVTRPQA RYPTTMVTLP GNVYPALPRM  240
DDEQCSSGTT RSEKEDGPGN A
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804247.11e-144transcription factor BHLH062-like
RefseqXP_025804248.11e-144transcription factor BHLH062-like
SwissprotQ69V101e-115BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A2T7EYZ51e-144A0A2T7EYZ5_9POAL; Uncharacterized protein
STRINGPavir.Ba00364.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.34e-28bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]