PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876718
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 323aa    MW: 35607.8 Da    PI: 9.8479
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876718genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-1146102155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  + ++   krk  + g ++ +++Aa+a++ a++k++g
  462876718  46 SSYRGVTRHRWTGRYEAHLWDnTC-RKegqKRKGRQ-GGYDKEDKAARAYDLAALKYWG 102
                67*******************443.44556667777.6699999*************98 PP

2AP248.81.8e-15145197156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                s y+GV++++++grW A+I  +     +k  +lg+f t+ eAa+a++ a++k++g+
  462876718 145 SIYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFATEAEAAEAYDIAALKFRGA 197
                57****************988532...5**********99*************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-846102IPR001471AP2/ERF domain
CDDcd000181.71E-1746110No hitNo description
SuperFamilySSF541711.31E-1446111IPR016177DNA-binding domain
SMARTSM003802.7E-1947116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1347111IPR001471AP2/ERF domain
PROSITE profilePS5103217.54347110IPR001471AP2/ERF domain
PRINTSPR003676.4E-74859IPR001471AP2/ERF domain
PfamPF008477.2E-10145196IPR001471AP2/ERF domain
CDDcd000181.14E-11145206No hitNo description
SuperFamilySSF541712.35E-17145205IPR016177DNA-binding domain
SMARTSM003802.3E-29146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18146204IPR001471AP2/ERF domain
PROSITE profilePS5103218.769146204IPR001471AP2/ERF domain
PRINTSPR003676.4E-7186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATPASPEVA TTAITVAGPD ASSSALAPPP PSPALPLVHA AGTRTSSYRG VTRHRWTGRY  60
EAHLWDNTCR KEGQKRKGRQ GGYDKEDKAA RAYDLAALKY WGANATTNFP KENYVNEIKE  120
MQFMGRHEVV ASLRRKSSGF ARGASIYRGV TRHHQNGRWQ ARIGRVAGNK DLYLGTFATE  180
AEAAEAYDIA ALKFRGANAV TNFEPSRYNL EAIALRDLPV NGPGRRLIQN PASETQGQVT  240
LNAPSSFSQQ SSNSLQPYLL PNLQQQLQPQ TSHPLQALPP ADYNYTYEPN FYWPYGTVEQ  300
KVQLDSKLEM VNGLLQLANS TAN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561687.11e-142AP2-like ethylene-responsive transcription factor AIL5
RefseqXP_021318170.11e-142AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6PQQ31e-100AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9VTA91e-144A0A0D9VTA9_9ORYZ; Uncharacterized protein
STRINGLPERR03G13190.11e-145(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.27e-86AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]