PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876498
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22826 Da    PI: 6.6856
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876498genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++nrqvtfskRrng+lKKA E+SvLCdaev  +ifss gkly+++s
  462876498  9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGAVIFSSAGKLYDFCS 59
               79***********************************************96 PP

2K-box691.5e-2371156186
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                yq++sgk l+++k++s + e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k n +l ++ + l  k ++
  462876498  71 YQTNSGKILWDEKHKSISAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLNTMLEDENKLLAFKLHQ 156
                89999999******************************************************************998877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-34296IPR002100Transcription factor, MADS-box
CDDcd002655.51E-45280No hitNo description
PRINTSPR004042.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-1382153IPR002487Transcription factor, K-box
PROSITE profilePS5129711.31784171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVGAVIFSS AGKLYDFCSP  60
KTSLSKILEK YQTNSGKILW DEKHKSISAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LIMIEEALDN GLTNLNEKLN TMLEDENKLL AFKLHQQDAE LSGSMRDLEL GYHPDRDFEA  180
QMPITFRVQP SHPNLQDNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19186178MEF2C
5f28_B1e-19186178MEF2C
5f28_C1e-19186178MEF2C
5f28_D1e-19186178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7403221e-154KU740322.1 Aristida purpurea PISTILLATA-like MADS-box transcription factor PI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816957.11e-136MADS-box transcription factor 2
SwissprotQ407021e-133MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A2S3HPC71e-135A0A2S3HPC7_9POAL; Uncharacterized protein
TrEMBLA0A3L6RIC41e-135A0A3L6RIC4_PANMI; MADS-box transcription factor 2
STRINGPavir.Ea03625.1.p1e-135(Panicum virgatum)
STRINGSi002929m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]