PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 600aa    MW: 65669 Da    PI: 8.5014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876117genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-09196220327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +lC f++r+ tCk+G+ C F H++
  462876117 196 GKLCAFYMRSRTCKFGEDCIFDHPQ 220
                579********************97 PP

2zf-CCCH28.23.4e-09244270127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+ff++tG+Ck+ ++CkF+H++
  462876117 244 PGEPNCPFFRKTGECKFKSKCKFNHPK 270
                5789*********************96 PP

3zf-CCCH37.83.3e-12300323427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  C+f+a+tG Ck+G++CkF+H++
  462876117 300 TVCSFYAKTGKCKFGATCKFNHPK 323
                68********************96 PP

4zf-CCCH29.21.6e-09379402326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +  C+f+++tG C yG  C+++H+
  462876117 379 EIDCSFYMKTGSCIYGTICRYNHP 402
                568********************9 PP

5zf-CCCH38.61.8e-12463487226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++  C+f+++tG+Cky ++CkF+H+
  462876117 463 GETVCDFYMKTGYCKYSEKCKFHHP 487
                6789********************8 PP

6zf-CCCH382.7e-12519542427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                e C f++r+GtCk+G +CkF H+p
  462876117 519 EVCAFYMRSGTCKFGVQCKFDHPP 542
                89********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.027193220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812193221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5193220IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6197220IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835243271IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5248273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206296324IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6296323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6298325IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-6301325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389376404IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4376403IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-7379402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7459489IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-7461488IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69461489IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10463487IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6466487IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-7515542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521515543IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5518544IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5519544IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10519542IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGRRASSAAG EVMRALFNGE EWFTRRALSE EIERERKKAA LGCESSAVGP SRKPDRGSPP  60
TFRAAVFCPV PCPPHCDERG IPSRRRCRIP CTRGDGEPPR RYSDYEVDLI AARYADVPLP  120
SLSPADVPLP HLSSAEVGYF DAHVGARRSA EVLYHHSVMG SHSTFGQSEP LYSSNTMVKR  180
PRLESGLTIY PQRPGGKLCA FYMRSRTCKF GEDCIFDHPQ WVPEGGIPNW REVQNVDDSY  240
PERPGEPNCP FFRKTGECKF KSKCKFNHPK GKVNEFMGVA DNEQSLIADS TVLLARPSET  300
VCSFYAKTGK CKFGATCKFN HPKDDKVPTL TGKQTIYTAA IDEEVFNGAA DGSNPAKTDK  360
PAPPAEAHNA KGLPIRPGEI DCSFYMKTGS CIYGTICRYN HPDRPVVDTA LMTSVTQGIL  420
PIPAPAAPAA VLNPIATFLP GFDIQAALMP LEPEPVVYPQ RPGETVCDFY MKTGYCKYSE  480
KCKFHHPIDR SAPRPNESWN LQQTVTITLA GLPRREGAEV CAFYMRSGTC KFGVQCKFDH  540
PPAEAITKLQ AAGGKKSAKK AKAVAKLMAA AEKKAEGLSI GLAEPSQKKA EGLSIVLAEP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312416.10.0zinc finger CCCH domain-containing protein 8-like isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0A9D1N20.0A0A0A9D1N2_ARUDO; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-121floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]