PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875706
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 313aa    MW: 34598.4 Da    PI: 7.9775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875706genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH566.9e-183281255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  462875706 32 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 81
               889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-2329102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8883080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1930105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-153281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-153285No hitNo description
SMARTSM003535.5E-133686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLNLRELTVR VETKGGSCSG SAGTDQLPNT PRSKHSATEQ RRRSKINDRF QILREILPQN  60
DQKRDKASFL LEVIEYIRFL QEKVQKYEVS QQEWSQENAK VMPWSNIYFR SVWKNAQNKD  120
EIDGDTTYDP SQVIKNGSSL GFPFAVKPAD CNKAAAFEIA SGGQELAEAN KKGCVSYKEA  180
DTPSNVANNV ASQQEAQLTK SSPTEDCAVN NEILKDPELA IDEGTISLSS QYSQGLLATL  240
NHALQNSGID LTQASISVQI NLGKRAAKRP APGADSTSKD LTSQVPHDQA TRRHLKDGAL  300
EHSQATKRHK SDR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822755.11e-174transcription factor BIM2-like isoform X2
TrEMBLA0A3L6PNX71e-172A0A3L6PNX7_PANMI; Transcription factor BIM1-like
TrEMBLA0A3L6RH251e-172A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRINGPavir.Fb01833.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-53BES1-interacting Myc-like protein 2