PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 464aa    MW: 49652.2 Da    PI: 9.8729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875481genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16236282455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  462875481 236 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 282
                5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.93E-17229286No hitNo description
Gene3DG3DSA:4.10.280.101.2E-20229290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-20230291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-13236282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MHQTANNNRS NGVATSTREQ EPSKESHRMP APATGAEPRA EFTAAKQPRL GGSGEALMNF  60
SLFSRPAAMA RASLQQSVQR PPPPLGTDKA SNVTVTGSTR VESTVVQASS GPRTAPVSAD  120
QRTAWPHAKE VRFACAAAPT TTAGVQQQEL PRDRLGNNMA LQRKVEARKA PEAAVAASSV  180
CSGNGAGIGN DESWRQQKRK SQTECSASQD DDLDDESGGL RRSGSRGTKR SRTAEVHNLS  240
ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMSM GGGLCVPPML  300
LPPTMQHLQM PPMAHFPHLG MGLGYGMGVF DMNSTATVPL PPMPGAHFPC SMIPGAAPQG  360
LGIPGRNTLP MFGVPGQAIH PSVPSVQPFP SLASLPPFPS LASLPVRPNL NPQVSATMAN  420
MVQEQQQVAN QQQQSLNNEG TQGANTGDPQ LQTILQVPTN KLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875481
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682498.10.0transcription factor APG isoform X2
SwissprotQ0JNI91e-178PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGSi000700m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-35phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]