PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875469
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 345aa    MW: 37964.8 Da    PI: 5.4109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875469genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10179235155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s ++GV++++++g+++A+++d  +   g +rk  + g+++ +e+Aa+a++ a++k++g
  462875469 179 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrRRKGKQ-GSYDAEEKAARAYDVAALKYWG 235
                5799*****************77668776667777.99******************98 PP

2AP239.31.6e-12265312555
        AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  r++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  462875469 265 YLRRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 312
                5689999*******9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-14179245IPR016177DNA-binding domain
CDDcd000184.48E-17179245No hitNo description
Gene3DG3DSA:3.30.730.101.4E-13180244IPR001471AP2/ERF domain
SMARTSM003804.9E-22180249IPR001471AP2/ERF domain
PfamPF008471.5E-7180235IPR001471AP2/ERF domain
PROSITE profilePS5103217.517180243IPR001471AP2/ERF domain
PRINTSPR003671.3E-5181192IPR001471AP2/ERF domain
PROSITE profilePS5103215.988259320IPR001471AP2/ERF domain
PfamPF008473.5E-6267312IPR001471AP2/ERF domain
CDDcd000182.91E-19268320No hitNo description
Gene3DG3DSA:3.30.730.104.3E-16268321IPR001471AP2/ERF domain
SMARTSM003802.6E-21268326IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-14268322IPR016177DNA-binding domain
PRINTSPR003671.3E-5302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEESEVGVNH RKQMEEKDKA AGKSGDEGKM ERSQSINLNR VPAVAKEAGR TQKNGETQSA  60
VVSEANDSST DKAKKCSGAD QTKSPKLEQV DYEGENEGHA ENPVKEASLV TVVGNEGRAD  120
CGDEDGRAQV LSIVKKDEAA DEDGDAINPV TIAGFREDNA VVAASAGVTN VRPAGSRSSS  180
FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQGSYDAEE KAARAYDVAA LKYWGPNTRL  240
NFPVSQYEKE LQDIKDLSQE ECVTYLRRRQ KDGRWQARIG LVAGTRDIYL GTFKTEEEAA  300
EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH CIEGEGLRLL ASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205212GRRRKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574603e-80EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953856.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK3YTI50.0K3YTI5_SETIT; Uncharacterized protein
STRINGSi017580m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-56AINTEGUMENTA-like 5