PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 277aa    MW: 30807 Da    PI: 8.8327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873209genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-101438226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               ++++C+f+++ G C++GdrC++ H 
  462873209 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
               6899********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0471240IPR000571Zinc finger, CCCH-type
SMARTSM003560.00551339IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-71438IPR000571Zinc finger, CCCH-type
PRINTSPR018483.2E-411837IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.2E-413757IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3305.9E-1844127IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.77455162IPR000504RNA recognition motif domain
PRINTSPR018483.2E-417590IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549285.68E-977127IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018483.2E-41103125IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNKP SISPTLLLCN MYQRPDMITP  60
GVDAQGNPID PERIQEDFED FYEDIFMELS KHGEIENLHV CDNLADHMIG NVYVQFREED  120
QAARALQXXX XXXXXRLPRG TLPPVRGEQL QPRRLLQLHA RQGDWQGDEA EALRSPASLP  180
PELQPRQPEP QXXXXXXXTT TAVAATGGAA RGTAATTATA AGGGVDGRGA GAPLGRAARR  240
GGRGLSNGTV RGRRRRRELL CSRRRLQVSR IQLQVQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A4e-4411261121Splicing factor U2AF 23 kDa subunit
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392601e-146BT039260.1 Zea mays full-length cDNA clone ZM_BFc0002K22 mRNA, complete cds.
GenBankBT0393401e-146BT039340.1 Zea mays full-length cDNA clone ZM_BFc0006D14 mRNA, complete cds.
GenBankBT0662821e-146BT066282.1 Zea mays full-length cDNA clone ZM_BFc0164N06 mRNA, complete cds.
GenBankBT0694071e-146BT069407.1 Zea mays full-length cDNA clone ZM_BFb0118A09 mRNA, complete cds.
GenBankEU9608981e-146EU960898.1 Zea mays clone 229462 splicing factor U2af 38 kDa subunit mRNA, complete cds.
GenBankEU9671721e-146EU967172.1 Zea mays clone 300006 splicing factor U2af 38 kDa subunit mRNA, complete cds.
GenBankJX4285361e-146JX428536.1 Zea mays subsp. mays clone pUT3136 C3H40 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287RSR13e-93A0A287RSR1_HORVV; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.15e-29C3H family protein