PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462871747
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 147aa    MW: 15465.9 Da    PI: 8.2213
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462871747genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.52.1e-282113197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf...............paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                +C++C+vlr++C+++Cvl+p++               +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg++ ++++
  462871747   2 SCNGCRVLRKGCSEECVLRPCLhggcalrpclqwidtAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGSGSW 101
                6*********************************99777889********************************************************** PP

     DUF260  86 qleqlkaelall 97 
                +l+q+++e++l+
  462871747 102 HLCQAAVETVLR 113
                ******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5031117IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-242111IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEECVLR PCLHGGCALR PCLQWIDTAE AQGHATVFVA KFFGRAGLMS  60
FLTAVPEPQR PAVFQSLLYE AAGRTINPVS GAVGLLGSGS WHLCQAAVET VLRGGAIRPL  120
PEFDAGGRAA VTDDRHKSAP APVLPPV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462871747
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654391e-99BT065439.1 Zea mays full-length cDNA clone ZM_BFb0156D21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.13e-70LOB domain-containing protein 37
SwissprotQ9FN112e-62LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A3L6QUY92e-69A0A3L6QUY9_PANMI; LOB domain-containing protein 37-like
STRINGPavir.Bb01170.1.p7e-70(Panicum virgatum)
STRINGSi031011m1e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-57LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]