PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462870249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 475aa    MW: 54621.7 Da    PI: 9.2876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462870249genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-075174126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ykt+lC  ++r G C++ d+C+FaHg
  462870249 51 YKTKLCALWQR-GGCSR-DTCSFAHG 74
               9**********.*****.*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-124580IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5915076IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-55174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
STRARALLFP SKPYPATRAS DREFSRRELA DPPLERSAAA MLGPPRRGPA YKTKLCALWQ  60
RGGCSRDTCS FAHGNAELRR FPGSRSSFPP RPGRRDYRGE DFRDRFDRRR SPRRRYSPER  120
DPRGHRSLHD RRPTSQERES SYSRSPSRKS ERRYEKKPDD GETNSSRSLS VSDNNDDRKK  180
DKFSSGDDKE DHEKQLKHIR EDMELLRDDK SHLEIILEEK NAEVRKICSR VNDLELLLKK  240
EKEECHRMTS KIKKFIKAHG RFLKAQEELK RSQARFERLG DLLASDILKR SANEEGSSIN  300
VDEDPNGPYE RSPNAAAPKK RSIPYSTSEE AKAVKKRRER ESDTISRPEN YRSEGTVAEF  360
DKQKKGPETT KSLYLKKKLW EDEKDKLGNA VSSATSDKVK DSPVKHALPS TGMAAHAMDD  420
PIEALELEDR HEPMDASLEN DADDENRSPV MPPRPPPMVN AYEQYEADDV EVDVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337KKRSIPYSTSEEAKAVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462870249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451585.20.0zinc finger CCCH domain-containing protein 13 isoform X1
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A194YMV60.0A0A194YMV6_SORBI; Uncharacterized protein
STRINGSi017193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.18e-18C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]