PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 381aa    MW: 42193.9 Da    PI: 9.1739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868220genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.1e-102551127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtG C++G +C+F+H+p
  462868220 25 PGEPDCTYYLRTGLCRFGMSCRFNHPP 51
               5789*********************97 PP

2zf-CCCH38.32.2e-127296327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C+++++tGtCk+G++CkF+H++
  462868220 72 QPECQYYLKTGTCKFGPTCKFHHPR 96
               799********************96 PP

3zf-CCCH36.77.2e-12118142327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tG+CkyG++CkF+H++
  462868220 118 EKECAYYLKTGHCKYGETCKFHHPE 142
                679********************96 PP

4zf-CCCH38.71.7e-12269294227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG Ck+G  CkF+H++
  462868220 269 DQPECQYYMKTGDCKFGVVCKFHHPR 294
                689*********************96 PP

5zf-CCCH42.88.7e-14314340127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++elC+f++r+G+Ck+G++CkF H++
  462868220 314 PGEELCKFYSRYGICKFGANCKFDHPM 340
                689**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9712452IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-52451IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-82651IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-52952IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-43050IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-66996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6946997IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-107296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-67398IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-57597IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6115142IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5115142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356115143IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9118142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5121141IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404267295IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.65E-5270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4273293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591313341IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8313340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6315340IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11315340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKGLWQQMAM NSGATMQPGP YPERPGEPDC TYYLRTGLCR FGMSCRFNHP PDRNLAIASA  60
RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG IAGRVQLNTL GYPLRPNEKE  120
CAYYLKTGHC KYGETCKFHH PEVFNAVASS RGSPIYPSVH SSARAGPHSY TGTIASWAFP  180
RASFIPSPRW QSPSNYTPMI VPQGLVQVPS WNSYPSQLQS PGAQRTYGTS QQGESSAGNQ  240
GMLSPYRSSS YPVPQYELQR ENVFPERPDQ PECQYYMKTG DCKFGVVCKF HHPRVRSLPP  300
PDCVLSPMGL PLRPGEELCK FYSRYGICKF GANCKFDHPM AAPMGVYAYG FSTSASPASA  360
STNVPMARRL LGSASGSGYT S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI360.0K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]