PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 416aa    MW: 45665.1 Da    PI: 7.843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866511genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09128150325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                +e+C+++a  G Ck+G  Ck++H
  462866511 128 QEECKYYATPGGCKFGKACKYIH 150
                589******************** PP

2zf-CCCH36.86.5e-12175199226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG Cky  +CkF+H+
  462866511 175 GEKECPYYMRTGSCKYSTNCKFHHP 199
                7899********************9 PP

3zf-CCCH25.52.4e-08367392227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C ++ r+G CkyG++C F+H++
  462866511 367 DQPVCTYYGRFGVCKYGPSCMFNHPF 392
                6899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.84125153IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038125152IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6129150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5129153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4131152IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802173201IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9175199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6176200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5179198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911319347IPR000571Zinc finger, CCCH-type
SMARTSM003560.015319346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5323349IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036365392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267365393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5366393IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5367392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MASWGLVLCG VVKGSGGSGS GSNSSSNKAS SPDDDQVPRE DYEGLTPDIS DSSGFDDKGS  60
ASNSVQGGDD KGSANTSENR RKTSYEIAAE PEKGSYFKKL DEANVTKHKV PKGAKDKRKE  120
TFGEGNAQEE CKYYATPGGC KFGKACKYIH REGKEGKVEA EKVDLNFLGL PLRPGEKECP  180
YYMRTGSCKY STNCKFHHPD PSNVSSKEPV KEHENADTPQ QNVQGPTQTT VPIWPDQRAM  240
NEQHVPFLAP AQPYSAGMMP PQGMYPSPDW SGYHQVPLNP YYPPGVPFQH FPAPVNHPMY  300
KPADLPGHQQ MPTDEYPERP GQPECQHFVR SGFCKYKMKC RYHHPRSRLP APLAGGLSPL  360
GLPIKPDQPV CTYYGRFGVC KYGPSCMFNH PFNYGPLPAA GPPLHGQYPT PANFTV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2T7EFS50.0A0A2T7EFS5_9POAL; Uncharacterized protein
STRINGSb08g012360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.18e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]