PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 262aa    MW: 27974.6 Da    PI: 7.0561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866440genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383.1e-1283129354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN  +++Lr ++P        K++Ka+ L +++ ++k+L
  462866440  83 KNHSEAERRRRERINAHLATLRGMVPCT-----DKMDKAALLAEVITHVKKL 129
                58*************************7.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1378135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14880129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1083129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1483138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1186135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.43E-5165233No hitNo description
Gene3DG3DSA:3.30.70.2603.6E-5165214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSLCLADHHR CGSLLEGDMS SVPLSDSGLY TGFGGGHDHE LISQVLGASS TSPVVLDRNA  60
QELDAAAAKD VGKRKGDRTE SLKNHSEAER RRRERINAHL ATLRGMVPCT DKMDKAALLA  120
EVITHVKKLK TNAARISQHC PVPADADEVT VELVHDGGVV LVKATLSCDD GADILADVRD  180
ALRPLRLRVV GSEVTTLGGR VRFTFLMSSP AGGDDDVSVG GVHQALQSVL DKANNALEFA  240
PRASLLNKRR RFSTFESSSS SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17292KRKGDRTESLKNHSEAERRRR
28893ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818650.11e-92transcription factor bHLH30-like
TrEMBLA0A3L6FN237e-93A0A3L6FN23_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G016039_P012e-93(Zea mays)
STRINGGRMZM2G166642_P012e-93(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-32bHLH family protein