PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462865574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 223aa    MW: 24648.4 Da    PI: 7.0995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462865574genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-1158100754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  462865574  58 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 100
                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.90E-544105No hitNo description
PROSITE profilePS5088815.26951100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1755123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1257106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-958100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1658117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.98E-6151189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGFLDIIEPK AAPLVDGAGL GVCKVEPGLT DSGGAFSAPP APVSKKKRVE GMPSKNLMAE  60
RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LDRIKQLQEE IDQEQQEAPG  120
VLSVFRELNP NEMVARNTPK FDVERKENGE TRVEIYCAAK PGLLLSTVST LDTLGLDIQQ  180
AVVSCFNDFG MHASCSEMQR ERISADMIKQ ELFKNAGYGG GCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14565KKRVEGMPSKNLMAERRRRKR
25966ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462865574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998890.0FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
GenBankFP1006430.0FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-119uncharacterized LOC100274388
SwissprotQ9LSL11e-68BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0E0AEJ81e-120A0A0E0AEJ8_9ORYZ; Uncharacterized protein
STRINGOGLUM06G29220.11e-120(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-55beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]