PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462865258
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 316aa    MW: 35442.6 Da    PI: 9.0829
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462865258genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173281155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  462865258 32 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 81
               78*******************......55************************997 PP

2AP238.72.6e-12124174155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+++k  g+W+++I         +k+++lg ++t+ eAa+ +++a+ + +g
  462865258 124 SRYRGVTQHK-CGKWESRIGQlM----GKKYVYLGLYDTEMEAAQVYDKAAIRCFG 174
                79********.7****9976633....25**********77**********98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-93281IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-163290IPR016177DNA-binding domain
PROSITE profilePS5103217.573389IPR001471AP2/ERF domain
SMARTSM003804.8E-323395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-173389IPR001471AP2/ERF domain
CDDcd000181.25E-123388No hitNo description
PfamPF008473.6E-7124172IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-16124183IPR016177DNA-binding domain
CDDcd000182.21E-23124184No hitNo description
PROSITE profilePS5103215.013125182IPR001471AP2/ERF domain
SMARTSM003809.3E-32125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-16125182IPR001471AP2/ERF domain
PRINTSPR003679.7E-6126137IPR001471AP2/ERF domain
PRINTSPR003679.7E-6164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEQCHAVAAV AADPWARPAL RKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  60
GFDTAHAAAR AYDQAAIKFR GVSADINFTL DDYKDDIKKM KNFSKEEFVQ VLRRQGAGFV  120
RGSSRYRGVT QHKCGKWESR IGQLMGKKYV YLGLYDTEME AAQVYDKAAI RCFGKEAVTN  180
FDPQTYDNEL QLQYGELDLE LSLGCAGGGR GGNPTTVADE AFISAPGKQR TSLTFELPEE  240
QDETIAGYPY RSIRTRPSQS PATPNGGAFG HHPADDHARI SGSWSALHVL HMVRSLITAH  300
RNHQTESHEE RRTNAC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462865258
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU414661e-167U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657174.21e-138PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotA0A0N7KMH01e-133AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3L6RYR21e-143A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGOB06G29960.11e-136(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-82AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]