PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864419
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 309aa    MW: 33021.8 Da    PI: 5.8419
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864419genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-172170255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  462864419 21 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 70
               8******99.**********933...5*************************98 PP

2AP2544.3e-17110159255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  462864419 110 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 159
                8******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-172081No hitNo description
SMARTSM003802.2E-322185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-272181IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-182180IPR016177DNA-binding domain
PfamPF008474.1E-102170IPR001471AP2/ERF domain
PROSITE profilePS5103221.8652179IPR001471AP2/ERF domain
PRINTSPR003672.4E-82233IPR001471AP2/ERF domain
PRINTSPR003672.4E-84460IPR001471AP2/ERF domain
CDDcd000181.58E-17109170No hitNo description
SMARTSM003802.2E-32110174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-27110170IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-18110169IPR016177DNA-binding domain
PROSITE profilePS5103221.865110168IPR001471AP2/ERF domain
PfamPF008474.1E-10110159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MADEGAGASR GGEGSSPPEK RYKGVRLRKW GRWVSEIRMP NSRERIWLGS YESAEKAARA  60
FDAAAVCLRG SRAGSLNFPE SPPNVRYIPA AQLTPELIQA EAGSSPPEKR YKGVRLRKWG  120
RWVSEIRMPN SRERIWLGSY ESAEKAARAF DAAAVCLRGS RAGSLNFPES PPNVRYIPAA  180
QLTPELIQAE AVRHANQPAS PAAAATAAAS SPQDAAHAGG GNNDRAALSV PASSTYSGVD  240
DALDWSFMDT LPSMSAPSSA GTSSELVPAM DDFMYGSPHP VMPPGVDGAP GMIDGDDDNT  300
FIGDDLWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-131080373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283825e-82KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973610.14e-89ethylene-responsive transcription factor ERF018
SwissprotQ84QC25e-30ERF17_ARATH; Ethylene-responsive transcription factor ERF017
SwissprotQ9S7L55e-30ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A3L6PN739e-88A0A3L6PN73_PANMI; Uncharacterized protein
STRINGPavir.Fb01602.1.p4e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-21ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]
  6. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]