PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 367aa    MW: 40780.2 Da    PI: 10.7741
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861481genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.9e-19135185256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++ge
  462861481 135 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYGE 185
                59****999.**********8...3.35*************************996 PP

2AP259.48.4e-19247296255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  462861481 247 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYG 296
                59****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-13134185IPR001471AP2/ERF domain
PROSITE profilePS5103219.454135195IPR001471AP2/ERF domain
SMARTSM003801.1E-24135201IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18135187IPR016177DNA-binding domain
PRINTSPR003675.2E-9136147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-26136185IPR001471AP2/ERF domain
CDDcd000181.79E-22136185No hitNo description
PRINTSPR003675.2E-9158174IPR001471AP2/ERF domain
PfamPF008478.8E-13246296IPR001471AP2/ERF domain
PROSITE profilePS5103221.799247304IPR001471AP2/ERF domain
SMARTSM003801.7E-35247310IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21247305IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-31248306IPR001471AP2/ERF domain
CDDcd000182.78E-26248306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MERVEEQGGD SSGAQARKKR MRRKSTGPDS IAETIKRWKE HNQKLQEVNG PRKAPAKGSK  60
KGCMAGKGGP ENVNFRKKRM RRKSTGPDSI AETIKRWKEH NQKLQEVNGP RKAPAKGSKK  120
GCMAGKGGPE NVNCAYRGVR QRTWGKWVAE IREPNRGKRL WLGSFPTAVE AAHAYDEAAR  180
AMYGELVRKK RMRRKSTGPD SIAETIKRWK EHNQKLQEAN GARKAPAKGS KKGCMAGKGG  240
PENVNCAYRG VRQRTWGKWV AEIREPNRGK RLWLGSFPTA VEAAHAYDEA ARAMYGPTAR  300
VNFSESSADA NSGCTSALSL LASNVPPAAQ RSDDKDEVES VETEVHDVKI EVNDDLRSIH  360
VERKTLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-13248303662ATERF1
3gcc_A1e-13248303662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5124600.0EF512460.1 Buchloe dactyloides dehydration responsive element binding protein (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.11e-103dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL193e-89DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA4ZZA11e-119A4ZZA1_9POAL; Dehydration responsive element binding protein
STRINGSi002067m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-33ERF family protein