PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 386aa    MW: 42864.9 Da    PI: 8.0623
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859540genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.79.2e-40167245177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC+adls+ak+yhrrh+vC +hskapvv+++g  + qrfCqqCsrfhe++efD++k+sCr+rLa+hn+rrrk++
  462859540 167 RCQVEGCTADLSQAKRYHRRHRVCAQHSKAPVVITAGaiMPQRFCQQCSRFHEVDEFDDGKKSCRQRLADHNRRRRKPK 245
                6*********************************9984458************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-32163231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.308165244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-35166245IPR004333Transcription factor, SBP-box
PfamPF031102.1E-31168243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLAWEKMNPA AVSASGSEPD VPGNTVPLPP TPSLFLPIMD QLESSSFLRS EQLTSSYNME  60
ANVPAVLAPN SYAAADYTSH FGHDHDILHF YHPASHYLDA GNPYSHFSES TFLPTPQDYY  120
FPTSLEESMG SFGVAPYAPM GINYGGGYQR YYLPTRGGYA YGHHPLRCQV EGCTADLSQA  180
KRYHRRHRVC AQHSKAPVVI TAGAIMPQRF CQQCSRFHEV DEFDDGKKSC RQRLADHNRR  240
RRKPKTIGTN VQLKRRAHVK KSATAKDNGG SSKSLTNRDI LGGSASTEYD QSMSHGEMAR  300
ELVDPKGKAP MEQQERIPQR LPQHAGYPFV LPPGSDTCSP LRQPVSGGNT SNIGSVQEPC  360
LAFHQYHQHG NIMQLGQTVF DLHFNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271682431184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKSCRQRLADHNRRRRKP
2238255RRRRKPKTIGTNVQLKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.11e-111protein LIGULELESS 1
SwissprotO040036e-97LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A0A9DKR31e-111A0A0A9DKR3_ARUDO; Lg1
STRINGSi022315m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-34squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]