PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 379aa    MW: 41629.6 Da    PI: 8.3953
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859534genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP121.73.4e-38161239177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC+adls+ak+yhrrh+vCe+hskapvv+++g  + qr CqqCsrfhe++efD++k+sCr+rLa+hn+rrrk++
  462859534 161 RCQVEGCTADLSKAKRYHRRHRVCEHHSKAPVVITAGaiMPQRSCQQCSRFHEVDEFDDAKKSCRQRLADHNRRRRKPK 239
                6*********************************9984458************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-32157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.154159238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-34160239IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30162237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMNSAPASAS GGELVLPGNP VPLPPTTSLF LPFMDHLESS SFLWSEQLTS SYNMEANVPA  60
VLAPNSNAAA DYTSHFGRDH DILQLYPPAS HYLAAGNPYS HFSGSTFLPT PQEYYFPTLL  120
EENMASFGAL PHAQLGINYS GYRTYYFPTR GGYAYGNHPP RCQVEGCTAD LSKAKRYHRR  180
HRVCEHHSKA PVVITAGAIM PQRSCQQCSR FHEVDEFDDA KKSCRQRLAD HNRRRRKPKL  240
FGTDVLLKKR AHTKKPATAN DKRSNSKSMG TGDVLVGNAS KDHGQGISNG EVVQAPVDPM  300
GKSPTKQQAR IPQQSLQEGF PFLLPPGSGT CLHQSQLISS GSTSNIGQVQ EPCVAFHQNP  360
QHGNILQLGQ SVFDLDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-271622371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220237KKSCRQRLADHNRRRRKP
2232249RRRRKPKLFGTDVLLKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.11e-118protein LIGULELESS 1
SwissprotQ01KM71e-104SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A3S6H5M91e-121A0A3S6H5M9_9POAL; Squamosa-promoter binding protein-like protein (Fragment)
STRINGSi022315m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-34squamosa promoter binding protein-like 8