PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 243aa    MW: 26986.1 Da    PI: 10.2466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859171genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-06215239123
                EEETTTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                y+C+ C+ksF ++  L+ H ++  H
  462859171 215 YVCKSCSKSFYSPVALEIHRKLkkH 239
                9******************997555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.741215243IPR007087Zinc finger, C2H2
PROSITE patternPS000280217239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGLREKHWGV VVKPGETLKC DPGEFYCAVS QIALEGGKGN ENVEVFVKVN GNILLMATLS  60
AFRHPQYATE LVFEKEFELL HTSKTRNVSV IGYRFSNDDE SKEAKICSEK LAAPRRAAVQ  120
SSKPKVTLEK RLNPGKLNVA CRSDDGENAK GKNRLVETPL KTPMEKKAKK TTSFTGKNIS  180
RAPVVQVKER DHVHVATPYP SEQVKRSPFS ISPSYVCKSC SKSFYSPVAL EIHRKLKKHG  240
AGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701520.11e-54PREDICTED: uncharacterized protein LOC101777617
TrEMBLA0A0A9GI371e-75A0A0A9GI37_ARUDO; Uncharacterized protein
STRINGSi002175m2e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-17histone deacetylase 2C