PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858448
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 381aa    MW: 42209.6 Da    PI: 7.6454
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858448genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1277.3e-40162240177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC adls+ak+yhrrh+vCe+hskapvv+++g  + qrfCqqCsrfhe++efD++k+sCr+rLa+hn+rrrk++
  462858448 162 RCQVEGCMADLSKAKRYHRRHRVCEQHSKAPVVIITGaiMPQRFCQQCSRFHEVDEFDDAKKSCRQRLADHNRRRRKPK 240
                6*********************************9984458************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.8E-33159226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.615160239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-35161242IPR004333Transcription factor, SBP-box
PfamPF031106.1E-32163238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMNPAAVSAS GSEPDVLGNP VPLPPTPSLF LPIMDQLESS SFLRAEQLTS SYNMEANVPA  60
VLAPNSYAAA DYTSHFGHDH DILHFYPPAS HYLDAGNPYS HFSESTFLPT PQDYYFPTLL  120
EENMGIFGVA PHAPMGISYG GGYRAYYLPA RGGYAYGHYP LRCQVEGCMA DLSKAKRYHR  180
RHRVCEQHSK APVVIITGAI MPQRFCQQCS RFHEVDEFDD AKKSCRQRLA DHNRRRRKPK  240
MTGTNVQLKR RVHVKKSATA KDNGGSSKSM ANRDIMEGSA SMEYDQSLSH GEMARELVDP  300
KGKAPMEQQE CIPQRIPQHA GSPFVLPPSS GTCSPLRQPV SGGNTSNIGP VQETCLALHQ  360
YHQHGNIMQL GQAVFDLDFN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281632381184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221238KKSCRQRLADHNRRRRKP
2233250RRRRKPKMTGTNVQLKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.11e-111protein LIGULELESS 1
SwissprotO040038e-96LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A0A9DKR31e-110A0A0A9DKR3_ARUDO; Lg1
TrEMBLK3Z6Z51e-110K3Z6Z5_SETIT; Uncharacterized protein
STRINGSi022315m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-33squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]