PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858183
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 526aa    MW: 54975.8 Da    PI: 6.6744
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858183genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26053.47.5e-1776141165
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 
                +CaaC++lrr C+++C +ap+fp  ++p++fa+v+  FG++  ++ l+  ++e++++a+++lv +A
  462858183  76 PCAACQHLRRPCPPNCDFAPHFPPgDDPARFAAVNMAFGTEYFIEHLRIRSPEQHTEAVNALVRQA 141
                7*********************88477***********************************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.07475176IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-1576142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
VPEGGGVEGD VVVRDREGGG AAVRGVPASP AAGVRPHGEV RRRARGVRRR RRRPEPPPPE  60
SGPAADGGRA TAAEPPCAAC QHLRRPCPPN CDFAPHFPPG DDPARFAAVN MAFGTEYFIE  120
HLRIRSPEQH TEAVNALVRQ AVEVVNVVIR ALLEANREDE RLRLAAVALR QLNARYREEA  180
ASARFVPEVV AARHDRVQAA TEQVPAGDSL AGVTNFETPM DQKWADGVIG ALPEADVPGS  240
RTGVTAAFPE PAATVPAFLM QQPPPQAPTA AGGLPDLNSS TVMGNSAPWT TGKLAARDFA  300
AAVSLAEASA IGAKHAVIDK VRKAQAAATE GGGQGGSDQR DAPAAILVAG VLPLDQAIDA  360
GIAGARCGVA IMVQHLGPLS LFSSPSVLTV LQNGSAAAVA ASVRARADLS VQEVSDELMT  420
NILVIDLEIM ADAAAMGARS ECFNLAWMHI LPIPVNRWAD ILTIVVGACV AAALTGCRRL  480
LNTDEDWIAL VLHGGLVLIV TVLAVGVFSV SNARPVSRRM WVTKPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452RGVRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-14LOB domain-containing protein 25