PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 353aa    MW: 37165.7 Da    PI: 5.2551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857794genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09169216455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  462857794 169 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 216
                8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17163234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-10163220No hitNo description
Gene3DG3DSA:4.10.280.109.8E-17165233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDSDYVTSLL MGACAPGLDF GALDGGFLDT LCGAAGGGGL FGAPGVVPPG GGADSREGSS  60
VSDPAWARSR DGGNARKRKA PAASGGGGEG KEACLGKVGE AKGGPDSKKC KVGGGDSPVK  120
PKVEEATASD GSVVDKGTKQ GKGKSSKPAV EPPKDYVHVR ARRGQATDSH SLAERVRREK  180
ISQRMKFLQD LVPGCNKVVG KALMLDEIIN YVQSLQQQVE FLSMKLATVN PQLDFSNLPT  240
LLHKDMYQAC GPSQSSVFPL ESAGAAFPFC HQPDLFQSFG AGAMEDQCSL SLLDTALPHT  300
TNPQFAFQKQ QRDFWEDGLQ NALPMGNEQI QEDGVSAPNF DGQLQVDDTK IEF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804696.10.0transcription factor BHLH089-like
SwissprotQ9CAA93e-55BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3L6QSR40.0A0A3L6QSR4_PANMI; Transcription factor bHLH49-like
STRINGPavir.Ba01626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]