PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855964
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29195.5 Da    PI: 9.1453
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855964genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  462855964  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
               79***********************************************95 PP

2K-box98.87.9e-33821758100
      K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  le + ++++qqe+akL+++i++Lq+++ hl+G+++++LslkeL+qLe++Leks++kiR++K+ell ++i+++ k+e elq++n++Lr+k++e
  462855964  82 PlLEINAQQYYQQESAKLRNQIQMLQNTNMHLVGDSVGNLSLKELKQLESRLEKSISKIRARKSELLATEINYMVKRETELQNDNMDLRTKIAE 175
                45677889***********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-32274IPR002100Transcription factor, MADS-box
CDDcd002653.79E-45274No hitNo description
PRINTSPR004045.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2486173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.51589179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
SVRATIERYK KAHACGSSSG APLLEINAQQ YYQQESAKLR NQIQMLQNTN MHLVGDSVGN  120
LSLKELKQLE SRLEKSISKI RARKSELLAT EINYMVKRET ELQNDNMDLR TKIAEGEQQL  180
QQVTVARSAT ISMEQMNPFA ALDTKCFFPA APFAALDMKC FLPGTLQLLE AQNQMLVTEL  240
NLGYQLAPPG TDITHHQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q6e-19169169Myocyte-specific enhancer factor 2B
1tqe_R6e-19169169Myocyte-specific enhancer factor 2B
1tqe_S6e-19169169Myocyte-specific enhancer factor 2B
5f28_A7e-19169169MEF2C
5f28_B7e-19169169MEF2C
5f28_C7e-19169169MEF2C
5f28_D7e-19169169MEF2C
6c9l_A6e-19169169Myocyte-specific enhancer factor 2B
6c9l_B6e-19169169Myocyte-specific enhancer factor 2B
6c9l_C6e-19169169Myocyte-specific enhancer factor 2B
6c9l_D6e-19169169Myocyte-specific enhancer factor 2B
6c9l_E6e-19169169Myocyte-specific enhancer factor 2B
6c9l_F6e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105379.21e-157uncharacterized protein LOC542326
SwissprotQ2QW531e-129MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLA0A3L6G7N61e-155A0A3L6G7N6_MAIZE; MADS-box transcription factor 13
TrEMBLB4FPN61e-155B4FPN6_MAIZE; MADS1
STRINGPavir.Cb01898.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Gindullis F,Rose A,Patel S,Meier I
    Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
    BMC Genomics, 2002. 3: p. 9
    [PMID:11972898]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Yamaki S,Satoh H,Nagato Y
    Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
    Planta, 2005. 222(3): p. 408-17
    [PMID:16001259]
  4. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]
  5. Yamaki S,Nagato Y,Kurata N,Nonomura K
    Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
    Dev. Biol., 2011. 351(1): p. 208-16
    [PMID:21146515]
  6. Li H,Liang W,Yin C,Zhu L,Zhang D
    Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
    Plant Physiol., 2011. 156(1): p. 263-74
    [PMID:21444646]
  7. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]