PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 326aa    MW: 35941.4 Da    PI: 10.7254
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855955genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.7e-2486134250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                rien   r vtfskRr+g+lKKA ELSvLC a+v viifss gk++e +
  462855955  86 RIENPVHRRVTFSKRREGLLKKARELSVLCSADVGVIIFSSLGKVHELA 134
                8*********************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-3177136IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-2777153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.76877137IPR002100Transcription factor, MADS-box
PROSITE patternPS00350079133IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-237999IPR002100Transcription factor, MADS-box
CDDcd002654.29E-3479154No hitNo description
PfamPF003198.2E-2286132IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-2399114IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-23114135IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQLQDSSKWT AAMKPTLAKG RIPLKVDFNI NAGHFTASSR LERNAYLNLF ITSAILQLKS  60
LQGQSKGRSS AGTQKTMVRG KVRMRRIENP VHRRVTFSKR REGLLKKARE LSVLCSADVG  120
VIIFSSLGKV HELATNGNMQ SLIERYQSIT AGSQVESKTL RSEVYLFTLS TFGGGAEDMR  180
LDRLHALEKG LQLWIYQTRS TKARQLFSAC LEMKYLAIHH LRVIRACPAD ILNLRQAEEE  240
GAPGLGGDCQ SSARRMRSRI AAMNEYLMAA VKIEKKMSVS CRSSDPPAQA SAPVSTTATA  300
LEGSGERRSP NRMSDSAGND GRLCCS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5R5755e-64A0A1Z5R575_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-31AGAMOUS-like 12