PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 305aa    MW: 33039.8 Da    PI: 6.8812
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855853genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.76.6e-09100124126
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng 26 
                ++y+GVr+++ +grW+AeIrdp+++g
  462855853 100 KKYRGVRYRS-SGRWAAEIRDPRQGG 124
                59******99.7*********98743 PP

2AP234.93.7e-111291671455
        AP2  14 rWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                rW+AeIrdp+    + +r +lg++ t+e+Aa+a+++ +++++g
  462855853 129 RWAAEIRDPR----QgRRAWLGTYCTPEDAARAYDREARRIRG 167
                8*******94....25************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-21100175No hitNo description
Gene3DG3DSA:3.30.730.105.0E-7101123IPR001471AP2/ERF domain
PfamPF008474.8E-8101167IPR001471AP2/ERF domain
SMARTSM003809.3E-29101181IPR001471AP2/ERF domain
PROSITE profilePS5103221.509101175IPR001471AP2/ERF domain
PRINTSPR003671.7E-6102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-21128175IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-15128176IPR016177DNA-binding domain
PRINTSPR003671.7E-6141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
CGSGILAQLT PARVHRRVTA ATLWPAAERK AAADLADDEF EAEFQLFEDG EVEEEEAESP  60
AALSEPGASK PKALSRAGVS VPSASSTNKR RGAAARPGTK KYRGVRYRSS GRWAAEIRDP  120
RQGGGSSWRW AAEIRDPRQG RRAWLGTYCT PEDAARAYDR EARRIRGKSA RLNFPLPQHP  180
PPATIDLNLP AVDSDDHDLH GAAGGHETHD MTTMDIDAGA GNVCHAVEST LMRIKELITQ  240
SQGPQDERLA SVVSELMNGG AIRSEARAAG ALLQYAALIS ECSQRMEQVA ALKRDLDRRE  300
AQLVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-14100176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-14100176464ATERF1
3gcc_A3e-14100176464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855853
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.19e-75ethylene-responsive transcription factor RAP2-12
TrEMBLA0A3L6SIM65e-76A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like
STRINGPavir.Ia04390.1.p8e-74(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-11ERF family protein