PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 258aa    MW: 28113.9 Da    PI: 10.2047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855790genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-061551921254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  462855790 155 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 192
                677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.915143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-6153197No hitNo description
SuperFamilySSF474597.72E-12153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0061154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-9157199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MHSRGERAAT TSFNALLQLH SHAGGRFLLD QTPSHPHVQA RYDYDVDGTA PAAAAQRSAT  60
SLFAESQFSS SGTAMSCGDA PAGGMMMMKP FPQQQQQPIL SQAILESKRL KSDVEGAQKA  120
CSSVMRRSSV PDSPAAVAKR PRIETPTPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  180
VLHEAIEYIK FLHDQVASLT SPYLRYGRPV QPQKRQGSSK AKDLRSRGLC LVPVASTYTL  240
GNETAPEFWH PTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378341e-63CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806482.12e-86transcription factor bHLH112-like isoform X2
TrEMBLA0A2S3HAQ54e-85A0A2S3HAQ5_9POAL; Uncharacterized protein
STRINGSi022548m1e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-49bHLH family protein