PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855479
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 629aa    MW: 67553.2 Da    PI: 9.8377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855479genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09590629448
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAv 48 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+
  462855479 590 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAI 629
                799***********************66......999999998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-49185370IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-12585629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199586629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-10589629No hitNo description
Gene3DG3DSA:4.10.280.107.1E-11589629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6590629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-4592629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
GVPFQPGSQA EVRTARSWAA GLGSVVRPQL AAKQARKGSS RKEEEGVVFG VPESTPAPEK  60
FLHQLPKLTS RLDPRGWSFP FSSPRCSDSR GKRSGPAARI PPSLPALDSA ASASIRAQAP  120
QSGIMVMKME IEDDGAVGGG TGGTWTEEDR ALGAAVLGTD AFAYLTKGGG VISQGLVATS  180
LSVDMQNRLQ ELVESDRPGA GWNYAIYWQL SRTKSGDLVL GWGDGSCREP RDGEVAAAAS  240
EGIDDTKQRM RKRVLQRLHI AFGGADEEDY APGIDQVTDT EVFFLASMYF AFPRRVGGPG  300
QVFAAGVPLW IPNSERKVYP TNYCYRGFLA NAAGFRTIVL VPFESGVLEL GSMQHIAESP  360
DVIETIRSVF AGASGNKAAV QKPEGNGSTP TERSPSLAKI FGKDLNLGHP SAAPVVSVSK  420
IDERSWEQRR AAGGSSLLPN VSKGGPSFTW TQARGLNSHQ QKFGNGVLIV SNEAAQRSNG  480
AADSSSATHF QLQKVPPLQK LQLQKLPQIQ KPPPLVTQQQ LQPQVPRQID FSAGSSSKPG  540
VLVTRTSVLD GESADVDGLC KEEGPPPIVE DRRPRKRGRK PANGREEPLN HVEAERQRRE  600
KLNQRFYALR AVVPNISKMD KASLLGDAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-231853709192Transcription factor MYC3
4rqw_B9e-231853709192Transcription factor MYC3
4rs9_A9e-231853709192Transcription factor MYC3
4yz6_A9e-231853709192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1571579RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967368.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_004967369.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
STRINGSi003963m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-67bHLH family protein