PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462854161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 507aa    MW: 54423.8 Da    PI: 6.5677
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462854161genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.1e-12135189155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf...gtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f   + +e+Aa+a++ a++k++g
  462854161 135 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFsgyDKEEKAARAYDLAALKYWG 189
                57****************988633...4888888853337789*************98 PP

2AP248.13e-15232283155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  462854161 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 283
                57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-15135198IPR016177DNA-binding domain
CDDcd000185.74E-21135199No hitNo description
PfamPF008474.5E-8135189IPR001471AP2/ERF domain
SMARTSM003802.6E-27136203IPR001471AP2/ERF domain
PROSITE profilePS5103215.527136197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-15136198IPR001471AP2/ERF domain
CDDcd000182.48E-24232293No hitNo description
SuperFamilySSF541715.49E-18232293IPR016177DNA-binding domain
PfamPF008476.5E-10232283IPR001471AP2/ERF domain
SMARTSM003802.1E-33233297IPR001471AP2/ERF domain
PROSITE profilePS5103219.348233291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18233291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDTSHNYPWL NFSLAHHCDL EEQERGAAAE LAAIAGAAPP PKLEDFLGGG NNNNGGGXXX  60
XXXXXXXXXX XXXXAAPSPS PVSSVEQGDA KLALPAAAAQ APAPEQRKAV DSFGQRTSIY  120
RGVTRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSGY DKEEKAARAY  180
DLAALKYWGS STTTNFPVAD YEKELEEMKN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH  240
HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EISRYNVESI  300
ISSNLPIGSM SAGGRSTKAV ESTPSNSPDA ITGGEAGTVP QSLAFSALPV KYDQQDYLSM  360
LALQHHQQGN LQGLGFGLYS SGVNLDFASS GGAGAMAHCY TNGASHEQYQ QQQDQQQQDQ  420
SQGSNSCSSI PYATPIAFGS KSGPAKLIVS QEAPAANHGE EERCETKGFR LILAMEDLLP  480
SVEREGEVEV SCGSSAEGGH VKAGDLV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462854161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960245.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ35e-98AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0A9DUL30.0A0A0A9DUL3_ARUDO; Uncharacterized protein
STRINGSi021959m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.14e-92AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]