PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849969
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 470aa    MW: 50580.7 Da    PI: 8.5477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849969genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-114973327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C++++rtG C++G +CkF+H+p
  462849969 49 EPDCSYYMRTGLCRFGMTCKFNHPP 73
               789********************97 PP

2zf-CCCH39.31.1e-12128153227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tGtCk+G++CkF+H++
  462849969 128 GQPECQYYLKTGTCKFGATCKFHHPR 153
                5799********************96 PP

3zf-CCCH33.57e-11175199327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C++++rtG+Ck+G +CkF+H++
  462849969 175 EKECDYYLRTGQCKFGMTCKFHHPE 199
                679********************96 PP

4zf-CCCH39.49.8e-13336361227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ CkF+H++
  462849969 336 DQPECQFYMKTGDCKFGAVCKFHHPK 361
                689*********************96 PP

5zf-CCCH36.48.7e-12381407127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C f++r+G Ck+G++CkF H++
  462849969 381 PGEPICTFYSRYGMCKFGPNCKFDHPM 407
                5799*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6194674IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-54673IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77126154IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6126153IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5132154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6172200IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5172199IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8175199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4178198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427334362IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5334361IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9336361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4340361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6379406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572380408IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7380407IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8382407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4385405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAATTAGAGG GAGAGEGSSS SAAAAAAAIW HMNLGEAAES GPYPERVGEP DCSYYMRTGL  60
CRFGMTCKFN HPPDRKLVTS VHSSILLSGI IAVAAAQMKG EYPQRNGQPE CQAVAAAQMK  120
GEYPQRNGQP ECQYYLKTGT CKFGATCKFH HPREKAAMAN RVQWNSLGYP LRPNEKECDY  180
YLRTGQCKFG MTCKFHHPEP SNTMVAVRGS VYSPGHAATS PGQHPYQGAV TSWPLSRSGS  240
FIASPRWPGH SSYAQVIVPP GLVQLPGWNP YAAQIGSSSS DDQQRTTGGA QYYTGSRRSE  300
PTGMGDPGPG MFSPYQAGSV PAGIYSRENV FPDRPDQPEC QFYMKTGDCK FGAVCKFHHP  360
KDRTIPAPNC QLSSIGLPLR PGEPICTFYS RYGMCKFGPN CKFDHPMAAV MYGLASSPTS  420
EAPTARRMLA HVPSQSEVSP DNGSGRSRRI THSDSQQTPS GERSTEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827474.10.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0A9NQM20.0A0A0A9NQM2_ARUDO; Uncharacterized protein
STRINGOB11G20340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-141zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]