PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 305aa    MW: 34581.1 Da    PI: 8.8012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849901genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-0795117527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C f++ +G Ck+G++CkF H++
  462849901  95 GCTFYSCYGMCKFGPKCKFDHPM 117
                5********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.10890118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
LAPHPQTTNN GRLEVPNTIL AHDGAKQLEW ASSVPVGLYV VQRENVFLDR PDKHNTGDCK  60
FCTVCKFHHP KDRTVPVPNC ALRTIKLPLS PGEPGCTFYS CYGMCKFGPK CKFDHPMQAI  120
MSQLSNWGSI IVCRNKYFRL YWTLCIIKGE CISRQTRMSV LHVDPRLLVP HPQTTNNGRL  180
EVPNTTLAHD GVKQLEKGNP RMFSSFRLAL FQLDFIHYRD QNVGSTCRPE IVSLVLCASF  240
IIQRIKQFLF LITTNNGRLE VPNTTLAHDG ETTEKGIPRM FLSFRLAMPS WTLCSTEGEC  300
ISRQT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849901
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.15e-35zinc finger nuclease 3