PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849898
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 80aa    MW: 9089.37 Da    PI: 8.5031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849898genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-081181027
               GGTS--TTTTT-SS-SSS CS
    zf-CCCH 10 artGtCkyGdrCkFaHgp 27
               +++G Ck+G  CkF+H++
  462849898  1 MKSGDCKFGVVCKFHHPK 18
               89**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006424.6E-5118IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.188119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MKSGDCKFGV VCKFHHPKDL TIPVPNFQSN NHYAWESPDA LSNLAMEYAS LVRNANSIIQ  60
CKLSYTSFLH HQPVRSQLLN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.21e-09zinc finger nuclease 3