PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 142aa    MW: 16342.4 Da    PI: 9.4596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849571genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1732107985
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 + k++ l +p +f ++hg+ +++ +tl+     grsW+v+l++  r +++r+ l+ GW +F+ +ngL++gD+++Fk+ 
  462849571  32 RSKKNQYLHVPVPFQDAHGYAERRRVTLR---MGGRSWTVNLKHskRTRGNRTALKYGWHQFCLDNGLRVGDICIFKVL 107
                45677999***********9988865555...489*******8865666666*************************54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2617136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1918109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-1422105No hitNo description
SMARTSM010191.9E-522115IPR003340B3 DNA binding domain
PROSITE profilePS5086312.32324137IPR003340B3 DNA binding domain
PfamPF023621.6E-1433108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGSSEFYRTL FPGDCKRKLS QFAVTLRPSN LRSKKNQYLH VPVPFQDAHG YAERRRVTLR  60
MGGRSWTVNL KHSKRTRGNR TALKYGWHQF CLDNGLRVGD ICIFKVLPDG DGGGEDDDYD  120
DDEEEGHVLK VEVRKKDGTF LH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985224.16e-47B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-45Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0A9SID02e-47A0A0A9SID0_ARUDO; Uncharacterized protein
STRINGPavir.Ia04671.1.p6e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]