PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 476aa    MW: 53126.5 Da    PI: 4.8974
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848618genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.8e-10179235155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s ++GV++++++g+++A+++d  +   g +rk  + g+++ +e+Aa+a++ a++k++g
  462848618 179 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrRRKGKQ-GSYDAEEKAARAYDVAALKYWG 235
                5799*****************77668776667777.99******************98 PP

2AP236.51.2e-11267311755
        AP2   7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                r + k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  462848618 267 R-RQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 311
                4.5569******9995.....234************************998 PP

3AP238.72.5e-12378425555
        AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  r++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  462848618 378 YLRRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 425
                5689999*******9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-16179245No hitNo description
SuperFamilySSF541712.35E-14180245IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-13180244IPR001471AP2/ERF domain
PfamPF008472.5E-7180235IPR001471AP2/ERF domain
PROSITE profilePS5103217.517180243IPR001471AP2/ERF domain
SMARTSM003804.9E-22180249IPR001471AP2/ERF domain
PRINTSPR003672.2E-5181192IPR001471AP2/ERF domain
PROSITE profilePS5103215.448259319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-16267320IPR001471AP2/ERF domain
PfamPF008471.7E-5267311IPR001471AP2/ERF domain
CDDcd000181.34E-18267319No hitNo description
SMARTSM003802.6E-21267325IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-14267321IPR016177DNA-binding domain
PRINTSPR003672.2E-5301321IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-8326358IPR016177DNA-binding domain
SMARTSM003808.3E-4326362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-9327357IPR001471AP2/ERF domain
PROSITE profilePS5103210.56327356IPR001471AP2/ERF domain
PROSITE profilePS5103215.988372433IPR001471AP2/ERF domain
PfamPF008475.5E-6380425IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-14381435IPR016177DNA-binding domain
CDDcd000181.34E-18381433No hitNo description
Gene3DG3DSA:3.30.730.107.0E-16381434IPR001471AP2/ERF domain
SMARTSM003802.6E-21381439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEESEVGVNH TKQMEEKDKA AGESGDEGKM ERSQSINLNR VPAVAKEASR TQKNDETQSA  60
VVSEANDSST YKAKECSGAD QMKSPKLERV DYEGENEGHT ENPAKEASLV TVVGNEGRAD  120
YGDEDGRAQV LSIVKKDEPA DEDGAAINPV TIAGFREDNA VVAASAGVTN VRPAGSRSSS  180
FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQGSYDAEE KAARAYDVAA LKYWGPNTRL  240
NFPVSQYEKE LQDIKDLSPE ECVTYLRRQK DGRWQARIGL VAGTRDIYLG TFKTEEEAAE  300
AYDIAAIEIR GKNAVTNFDR SNYMDRGSYD AEEKAARAYD VAALKYWGPN TRLNFPVSQY  360
EKELQDIKDL SQEECVTYLR RRQKDGRWQA RIGLVAGTRD IYLGTFKTEE EAAEAYDIAA  420
IEIRGKNAVT NFDRSNYMDR VSEIPPLIRS VPVGSELATS EVVPERVAKQ QQQQQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205212GRRRKGKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352124e-65BT035212.1 Zea mays full-length cDNA clone ZM_BFb0046C03 mRNA, complete cds.
GenBankEU9574604e-65EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953856.11e-173AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ32e-62AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3YTI51e-172K3YTI5_SETIT; Uncharacterized protein
STRINGSi017580m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-53AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]