PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848597
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 481aa    MW: 52819.2 Da    PI: 8.8133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848597genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-123459227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++++C+++++tGtCk+G++CkF+H++
  462848597 34 GQPECQYYLKTGTCKFGATCKFHHPR 59
               5799********************96 PP

2zf-CCCH33.57.2e-1181105327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C++++rtG+Ck+G +CkF+H++
  462848597  81 EKECDYYLRTGQCKFGMTCKFHHPE 105
                679********************96 PP

3zf-CCCH39.41e-12240265227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ CkF+H++
  462848597 240 DQPECQFYMKTGDCKFGAVCKFHHPK 265
                689*********************96 PP

4zf-CCCH39.41e-12347372227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ CkF+H++
  462848597 347 DQPECQFYMKTGDCKFGAVCKFHHPK 372
                689*********************96 PP

5zf-CCCH36.49e-12392418127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C f++r+G Ck+G++CkF H++
  462848597 392 PGEPICTFYSRYGMCKFGPNCKFDHPM 418
                5799*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-63259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.773260IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-103459IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-53860IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-578105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.00978106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-678106IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-881105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-484104IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427238266IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9240265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4244265IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427345373IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4351372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6390417IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572391419IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8393418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4396416IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLAFGMTCKF NHPPDRKLAV AAAQMKGEYP QRNGQPECQY YLKTGTCKFG ATCKFHHPRE  60
KAGMANRVQW NSLGYPLRPN EKECDYYLRT GQCKFGMTCK FHHPEPSNTM VAVRGSVYSP  120
GHAATSPGQH PYQGAVTSWP LSRSGSFIAS PRWPGHSSYA QVIVPPGLVQ LPGWNPYAAQ  180
ISSSSSEDQQ RTTGGAQYYT RRSETTGMGD PGPGMFTSYQ AGSVPAGPYS RENVFPDRPD  240
QPECQFYMKT GDCKFGAVCK FHHPKDRTIP APNCQLSSIG LPLRPAQISS SSSEDQQRTT  300
GGAQYYTRRS ETTGMGDPGP GMFTSYQAGS VPAGPYSREN VFPDRPDQPE CQFYMKTGDC  360
KFGAVCKFHH PKDRTIPAPN CQLSSIGLPL RPGEPICTFY SRYGMCKFGP NCKFDHPMAA  420
VMYGLASSPT SEAPMSRRML AHVPSQSEVS PDNGSGRSRR ITHSDSQQTP PGERSTEREA  480
S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662931.11e-174PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J41e-174C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9XRZ11e-173A0A0D9XRZ1_9ORYZ; Uncharacterized protein
STRINGORGLA11G0112800.11e-173(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-104zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]