PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848579
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 182aa    MW: 19768.8 Da    PI: 10.5116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848579genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.1e-05721061554
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++ ++   L++l+ +      +K + a++L +A+eYIk L
  462848579  72 KLGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 106
                5556666777777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.61157106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-567111No hitNo description
SuperFamilySSF474591.57E-1167124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-871114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MMKPPFPQQQ QPILSQALVE SKRLKADIGG VQEACSSVTR RSSVPDSPAV AAKRPRIETP  60
TPLPTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV ASLTSPYLRC  120
GRPVQPQKQQ GSSKAKDLRS RGLCLVPVAS TYTVANDDAG VLAPNIWGHV SVEKLGGTTR  180
KS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378346e-71CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806482.17e-65transcription factor bHLH112-like isoform X2
SwissprotQ94JL32e-40BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A2T7EBW81e-63A0A2T7EBW8_9POAL; Uncharacterized protein
STRINGSi022548m2e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]