PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 182aa    MW: 19018.1 Da    PI: 7.6086
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848553genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.6e-398100193
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeA+ar+rdPvyG+v+ i+  +++ + ++a 
  462848553   8 PCAACKLLRRKCTQGCVFAPYFPPDNPSKFANVHRVFGASNVSKLLNELPHAQREDAVNSLAYEADARLRDPVYGCVSSISYHHHHHAAAAAA 100
                7******************************************************************************99888777666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6127108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-398100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSSSSSPCA ACKLLRRKCT QGCVFAPYFP PDNPSKFANV HRVFGASNVS KLLNELPHAQ  60
REDAVNSLAY EADARLRDPV YGCVSSISYH HHHHAAAAAA AHAGGATVAV VPPDAAAPYH  120
GGFLFQQQHQ QPPSKAQTAV ALTYQTEPSP PPSSPGQSPA EVSHRQRTEG SDEGCGGGAP  180
PA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126119e-73CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1369729e-73AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBankAP0149599e-73AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466819.15e-51hypothetical protein SORBIDRAFT_01g014650
SwissprotQ9FML41e-46LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLM7YYN81e-61M7YYN8_TRIUA; Uncharacterized protein
STRINGSb01g014650.11e-50(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-45LBD family protein