PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848294
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 520aa    MW: 55495.9 Da    PI: 6.1476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848294genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08264286426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C++f+r G C+ Gd+C F+Hg
  462848294 264 VPCPNFRRPGGCPSGDSCEFSHG 286
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.67E-869133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-871134IPR020683Ankyrin repeat-containing domain
CDDcd002046.63E-872133No hitNo description
PROSITE profilePS5008812.18290125IPR002110Ankyrin repeat
SMARTSM002480.006890122IPR002110Ankyrin repeat
PROSITE profilePS5029712.0990130IPR020683Ankyrin repeat-containing domain
PfamPF000232.1E-490120IPR002110Ankyrin repeat
PROSITE profilePS5010313.995260288IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4260287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5261289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-6263287IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6264286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGDLADLACA TEGPRLAGAG LRDRLAALLE LAAADDVAGF REALDGGGEE EATELADGVG  60
LWYGRSKAYE PRTPLMVAAT YGVNRRPGVD GATALHCAAS GGSRNAIAVV KLLLAAGADP  120
VTPDSAGRFP ADVILAPPGS PDALGDLEML LGRRRGLTVA TSVPSGSSSP PLSSSPDEGN  180
GSPSSRSSSL SPITVDRGRK EYPVDPTLPD IKSSVYASDE FRMYAFKVRP CSRAYSHDWT  240
ECPFVHPGEN ARRRDPRKHP YTAVPCPNFR RPGGCPSGDS CEFSHGVFES WLHPSQYRTR  300
LCLLSPRATS SIDMTAAAAL GLLTGSPTRH FVPPPGSPSS ANNGGGAAAH WLQGSRLRSS  360
FNARDAQVDD LGALLEWESQ YLGALSLPQS SRSQQRLSTG LSIRPTAITP SSLEEMYASD  420
MAMSPRFAND QGIRCHRWVR RAIHWGVDDE EMVRLRRPVQ SGVAEEEPDV SWVQSLVNHS  480
ELNGMASRSL NRPDLSNQAD LLDQTSEGRL QQSIGSQIGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A3L6QMX00.0A0A3L6QMX0_PANMI; Uncharacterized protein
STRINGOB07G24910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.13e-86CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]