PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462845465
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 513aa    MW: 55493.8 Da    PI: 7.6753
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462845465genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11120152138
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 
                s+y+GV++++++grW+++I+d      + k+++lgkf +
  462845465 120 SQYRGVTFYRRTGRWESHIWD------TgKQVYLGKFSF 152
                78*******************......44********98 PP

2AP242.12.1e-13241291155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  462845465 241 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 291
                89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-5120163IPR016177DNA-binding domain
PfamPF008471.1E-4120152IPR001471AP2/ERF domain
CDDcd000185.14E-18121206No hitNo description
SMARTSM003801.3E-21121212IPR001471AP2/ERF domain
PROSITE profilePS5103215.646121206IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-7174207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-9175206IPR001471AP2/ERF domain
CDDcd000185.78E-24241301No hitNo description
SuperFamilySSF541712.29E-16241300IPR016177DNA-binding domain
PfamPF008475.6E-9241291IPR001471AP2/ERF domain
SMARTSM003803.3E-30242305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-15242299IPR001471AP2/ERF domain
PROSITE profilePS5103215.988242299IPR001471AP2/ERF domain
PRINTSPR003671.2E-5243254IPR001471AP2/ERF domain
PRINTSPR003671.2E-5281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
PARGGGSGAV DSGQIARAVE QEAASPTSSH AGGGGGFFRF DLLNWSPDEE GSSPPVVTRQ  60
LFPSPSSPRP GALPSDGSPP PSSVVVGPWT FGAANHAAAT PSPAPSPGKK SRRGPRSRSS  120
QYRGVTFYRR TGRWESHIWD TGKQVYLGKF SFLVRAIFGE LSASVQFADA VVPLLIGGFD  180
TAHEAARAYD RAAIKFRGLD ADINFDLKDY EDDLKQMRNW SKEEFVHILR RQSTGFARGS  240
SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LFDSEIEAAR AYDRAAIRFN GKDSVTNFDP  300
SCYDGDVPPD IEKDGTSTLG CSTVKLKLQA YDRAAIRFNG KDSVTNFDPS CYDGDVPPDI  360
EKDEVLDGDI LDLNLRISQP NVHHLKSDGI LTGLRPSGES PEASTVVSPQ PGSPQWPIHS  420
QSTSTPTQHS HLYASPCPGF FVNFREAAME EKRAETVGPP PFPPWAWRMQ GFSPVPSLTA  480
TAASSGFSTA TGAGVPSTHP RQFANGYHFP PTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462845465
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0633577e-42BT063357.1 Zea mays full-length cDNA clone ZM_BFc0055O08 mRNA, complete cds.
GenBankBT0882497e-42BT088249.1 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds.
GenBankEU9741867e-42EU974186.1 Zea mays clone 442332 floral homeotic protein mRNA, complete cds.
GenBankFJ6866977e-42FJ686697.1 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds.
GenBankKJ7269397e-42KJ726939.1 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459580.11e-163floral homeotic protein APETALA 2 isoform X2
SwissprotQ8H4431e-160AP23_ORYSJ; APETALA2-like protein 3
TrEMBLC5XDI61e-162C5XDI6_SORBI; Uncharacterized protein
STRINGSb02g007000.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-80AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]