PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028073m
Common NameEUTSA_v10028073mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 238aa    MW: 26121.9 Da    PI: 9.0235
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028073mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.31.9e-3257132274
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                       ++k++++++h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl  a+p+i+ +tg++ ++ +++    
  Thhalv10028073m  57 SVQKKPSKDRHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLHHAEPSIISATGSGIKPTTDSvsqP 132
                      579*************************************************************777764443221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.8863117IPR017887Transcription factor TCP subgroup
PfamPF036343.6E-2563127IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MMDPKNPNQP QVPNFPNPSP QNQDNEKTAK ETDFKGFNTV EGKRKWKKNH KENEEQSVQK  60
KPSKDRHLKV EGRGRRVRLP PLCAARIFQL TRELGHKSDG ETLQWLLHHA EPSIISATGS  120
GIKPTTDSVS QPPLTADLSL KGAPRSQIAN GFWPNETGFD GGANASTAGG FDLNYGIGFL  180
GFDFNGSSGM GYENNQMSQD GTVGVLNPQI YPQFALQQAK AHHHNLQHEA QQEKNGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028073m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405404.11e-177transcription factor TCP6
SwissprotQ9FLM66e-79TCP6_ARATH; Transcription factor TCP6
TrEMBLV4LWE91e-176V4LWE9_EUTSA; Uncharacterized protein
STRINGXP_006405404.11e-176(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-72TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]