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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025957m | ||||||||
Common Name | EUTSA_v10025957mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NZZ/SPL | ||||||||
Protein Properties | Length: 276aa MW: 30292.7 Da PI: 9.029 | ||||||||
Description | NZZ/SPL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NOZZLE | 185.2 | 5.7e-57 | 1 | 140 | 1 | 149 |
NOZZLE 1 matslffmstdqnsvrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssva 93 matslff+ tdqn npnel rnt+ v n sgeirte ++k+rgrkpgskt+qq+qkkp rgmg+a+ler +ie ekkk +va+ gdts Thhalv10025957m 1 MATSLFFIPTDQN---NPNELQRNTHHV-NGSGEIRTEpQQKTRGRKPGSKTGQQNQKKPKRRGMGMAQLERIRIEGEKKKTAVAGGGDTS--- 87 9***********9...9**********9.*********778**************************************************... PP NOZZLE 94 aisntatrlpvpvdrgvvlqgfps.......slgssrilcggvgsgqvmidpvispwgfvets 149 +trlp d+gvvlqgfps s +sr++cggvgsgq+mi+ pwgfvet Thhalv10025957m 88 ---AITTRLP---DPGVVLQGFPSyggpttaSSFGSRLYCGGVGSGQIMIE----PWGFVETP 140 ...3479***...***********999988755569*************97....6*****96 PP | |||||||
2 | NOZZLE | 211 | 8.2e-65 | 141 | 275 | 169 | 314 |
NOZZLE 169 nnrcdtcf.kkkrldgdqnnvvrsngggfskytmipppmngydeyllqsdhhqrsqgflydqriaraasvsaasasinpyfneatnltgsreef 261 n r dtcf kkkrldgd++nvvrsngggfskytmipppmngyd+ ll++d qr qgf+yd+r+ar+a sa+ s pyf eatn+tg +ef Thhalv10025957m 141 NIRYDTCFiKKKRLDGDDQNVVRSNGGGFSKYTMIPPPMNGYDH-LLPPD--QRNQGFFYDHRLARSA--SAS--SNHPYFHEATNHTGLLDEF 227 7799***97899*******************************9.*****..***************9..555..458**************** PP NOZZLE 262 gsvlegnprngsrgvkeyeffpgkydervskvakvaslvgdcspn..tidlslkl 314 s nprng++ vkeyeffp kyde s va++vgdcspn tidlslkl Thhalv10025957m 228 ESG---NPRNGTGDVKEYEFFPRKYDETDS----VATSVGDCSPNisTIDLSLKL 275 996...*********************887....689*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08744 | 9.0E-113 | 3 | 275 | IPR014855 | Plant transcription factor NOZZLE |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MATSLFFIPT DQNNPNELQR NTHHVNGSGE IRTEPQQKTR GRKPGSKTGQ QNQKKPKRRG 60 MGMAQLERIR IEGEKKKTAV AGGGDTSAIT TRLPDPGVVL QGFPSYGGPT TASSFGSRLY 120 CGGVGSGQIM IEPWGFVETP NIRYDTCFIK KKRLDGDDQN VVRSNGGGFS KYTMIPPPMN 180 GYDHLLPPDQ RNQGFFYDHR LARSASASSN HPYFHEATNH TGLLDEFESG NPRNGTGDVK 240 EYEFFPRKYD ETDSVATSVG DCSPNISTID LSLKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF159255 | 4e-39 | AF159255.1 Arabidopsis thaliana sporocyteless (SPL) mRNA, complete cds. | |||
GenBank | DQ653227 | 4e-39 | DQ653227.1 Arabidopsis thaliana clone 0000017356_0000012141 unknown mRNA. | |||
GenBank | DQ446873 | 4e-39 | DQ446873.1 Arabidopsis thaliana clone pENTR221-At4g27330 sporocyteless (At4g27330) mRNA, complete cds. | |||
GenBank | AB493704 | 4e-39 | AB493704.1 Arabidopsis thaliana At4g27330 mRNA for hypothetical protein, partial cds, clone: RAAt4g27330. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413089.1 | 0.0 | hypothetical protein EUTSA_v10025957mg | ||||
Swissprot | O81836 | 1e-111 | SPL_ARATH; Protein SPOROCYTELESS | ||||
TrEMBL | V4MGZ8 | 0.0 | V4MGZ8_EUTSA; Uncharacterized protein | ||||
STRING | AT4G27330.1 | 1e-109 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13435 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27330.1 | 1e-112 | sporocyteless (SPL) |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025957m |
Entrez Gene | 18028174 |