PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024162m
Common NameEUTSA_v10024162mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 271aa    MW: 30705.2 Da    PI: 9.6036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024162mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-17749244
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +i n+s r++tf kR++g+lKK +E+S+LC++ ++ ii+s+  
  Thhalv10024162m  7 FIANDSSRKTTFKKRKKGLLKKVNEVSTLCGITACAIIYSPYS 49
                     899*************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-16156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.152146IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-23191IPR002100Transcription factor, MADS-box
PfamPF003191.3E-16752IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
KKVKLAFIAN DSSRKTTFKK RKKGLLKKVN EVSTLCGITA CAIIYSPYSN PEVWPSNSCV  60
QMVVSDFQTL PKMDQHKKMV DQELFLKQRI AKTFEHLKNQ KKNNREMEIT KVIFQYLLGN  120
TGMFHVNTMD LNNLGYLIEQ YLKDINRMIE ILGNTGIEIG NAAAIATTTT VPTTAIHEVA  180
AASSATISSS APHVEFYEQT RNLNQNHNQN QKHLFMEIMI HPEQITYGVK HMSFPFIDDN  240
HRNHHQQQQI PSDSSKVPTI VSSSNIIPVY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024162m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392157.11e-109agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-88AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4KQB80.0V4KQB8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006392237.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-70AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]