PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023507m
Common NameEUTSA_v10023507mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 395aa    MW: 42143.1 Da    PI: 6.7267
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023507mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.59.4e-42492223136
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++       
  Thhalv10023507m  49 TTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpskavpl 142
                      579*****************************************************************99988888888888666667778888 PP

              TCP  89 ................................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                                                      +  ++++ +++++q+ ++++ +  + +  +  +r+r+r+++++  ++++
  Thhalv10023507m 143 ygalglshhhhqyeeqggafgahtppllgfhhH-LQQHQhHQNQNQRLDQAQEETIQGTDGENFSRKRYRSEKENDDRKQN 222
                      8888888888899999*********99999852.44443366666666666677777777788888888666655555433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4353221IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41154108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDLSDGAAAR GGNSRQLVDP SLSIVPRSTS LEDDTLATTS SPAVTTTVTT KRSTKDRHTK  60
VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIVAATG TGTIPANFSS  120
LSVSLRSSGS TLSAPPSKAV PLYGALGLSH HHHQYEEQGG AFGAHTPPLL GFHHHLQQHQ  180
HHQNQNQRLD QAQEETIQGT DGENFSRKRY RSEKENDDRK QNENKSLKES ESPASAAAAA  240
PMWAVAPTSR ATGGNTFWML PVPTTAGNQP AAMESSSNTN RAHMWPFVNS AGAVAGAGAA  300
THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQAMPDSNLG MLAALNAAYP RGGNANANPN  360
AEQVNNAVEH QEKQQQPQQS DPDDDSRDGN SNSD*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023507m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392342.10.0transcription factor TCP8
SwissprotQ9C5181e-171TCP8_ARATH; Transcription factor TCP8
TrEMBLV4KQK70.0V4KQK7_EUTSA; Uncharacterized protein
STRINGXP_006392342.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-120TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]