PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021948m
Common NameEUTSA_v10021948mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 405aa    MW: 46367.5 Da    PI: 7.217
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021948mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.93.4e-421543132133
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.. 73 
                      + +kdrhski T++g RdRR+Rls+e+a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                    s +++s+   
  Thhalv10021948m 154 PSRKDRHSKIKTAKGTRDRRMRLSLEVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKSlsnhggfssgeesqtqpalgSMDTSSDLce 247
                      579*************************************************************888888877777655555442222222223 PP

              TCP  74 ..eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                        +                               ++++   k+k sq +++   +l+k+srakar+ra+ert+ekm+++
  Thhalv10021948m 248 laS-------------MwtvddrgsntnttetqgNKRSMRGKRKMSQPRTTILKKLSKDSRAKARERAKERTKEKMMKR 313
                      231.............0222222223444455657777777999999999999***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-42155312IPR005333Transcription factor, TCP
PROSITE profilePS5136932.197156214IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.301292309IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MNNNTFSTTS TNNEDYMLFP YNDHYSSQPI LPFSPSSSIN DILIHSNFNT PNNHLDHHHP  60
HHQFLQATSS PFSQFEFVPD FTLLASFLPQ NNGHYDNQTI TTTDHHHHHP SLLPLNNPTG  120
ESQLVEPSET ITHIEDCQRF STSQDPEMKR LKRPSRKDRH SKIKTAKGTR DRRMRLSLEV  180
AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIAKSLSN HGGFSSGEES QTQPALGSMD  240
TSSDLCELAS MWTVDDRGSN TNTTETQGNK RSMRGKRKMS QPRTTILKKL SKDSRAKARE  300
RAKERTKEKM MKRRLQVNVV QEEAPNQYGE NNKSDVNWSS FDQATTCEEE MEELCNNDRF  360
AVRNEFLLNK KDHISDEAYD MINKLNSSFP MLNHHRSQGA ATSIE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021948m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406593.20.0transcription factor TCP18
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLV4NNJ80.0V4NNJ8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006406593.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-169TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]