PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021183m
Common NameEUTSA_v10021183mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 312aa    MW: 35785.6 Da    PI: 5.0903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021183mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.8e-161150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i n+s r+ tf kR+ g  KK +ELSvLC++e++ +i+s+
  Thhalv10021183m 11 ITNDSMRKATFNKRKRGFVKKIHELSVLCGIEACAVIYSP 50
                     89************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128149IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-23294IPR002100Transcription factor, MADS-box
CDDcd002668.22E-34285No hitNo description
PRINTSPR004045.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTRKKLNLAY ITNDSMRKAT FNKRKRGFVK KIHELSVLCG IEACAVIYSP FSSGPEVWPS  60
NSGVKEVVEK FVMLPEIEQE KKMVDHEGFL RQSINKTMEN NDKKTKENKE RMMKEVMFEF  120
LGGQGDMLSL TDKTREDLCK YIDQYLKELY HHRNQTLTQS QLEYGESSSA ADVMAPAAIA  180
EVGPSAFPNP DVFNPPQLLP NELWALRPII PSDPKPEPGM TFGDNFLPAA NDQQVYYQMM  240
NPVGVCDHQL NLHLNDNQYQ NQFGYPNVSQ DGIYNPNQQQ EAWLVNQMMN NPEQMCLPMI  300
EDNNRYYLQQ P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021183m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408018.10.0agamous-like MADS-box protein AGL80 isoform X1
SwissprotQ9FJK34e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4NS160.0V4NS16_EUTSA; Uncharacterized protein
STRINGXP_006408018.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.11e-101M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]