PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020546m
Common NameEUTSA_v10020544mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 508aa    MW: 55863 Da    PI: 8.2881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020546mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0596118123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Thhalv10020546m  96 FVCEICNKGFQRDQNLQLHRRGH 118
                      89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.38E-695118No hitNo description
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121718.1E-596118IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355260138168IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.38E-6168193No hitNo description
SMARTSM00355180173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNKDMLLHQQ VQQQEENMSN LTSASGDQAS VSSGNRTEAS GSNYFPHQQQ QLEQQQQFFV  60
PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYIC PEESCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH  240
QPNPLLIHQP SSHHHQTQPN MNVSSPSSSS HNIINSLHFG TNNGTSNINS SSNHLHTFPV  300
KKEQQQSNDH IINYHHHSIP PWLAPQPQDL ISSNPNPSNG GGGGGGLFSL AASPAMSATA  360
LLQKAAQMGS TKTPPLPPTI EFERSAHHNN LTTTMAAMMT SPSGFISSNN NNQVLFQDYN  420
ASGFDHNGGE EAFDDTFGGF LRTNAATTAS AAGSDQNKSG GGGEGLTRDF LGLRPLMSHN  480
EILSFAGLGN CINGPASDQL HPKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-32169237371Zinc finger protein JACKDAW
5b3h_F9e-32169237371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020546m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407162.20.0protein indeterminate-domain 11
RefseqXP_024015104.10.0protein indeterminate-domain 11
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGXP_006407162.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]