PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019839m
Common NameEUTSA_v10019839mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16804.8 Da    PI: 11.0263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019839mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-23953145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     kr e++snr+vt+skRr gilKKA+ELS+LCd+++ +++fs++g+
  Thhalv10019839m  9 KRLESSSNRKVTYSKRRSGILKKAKELSILCDIDIVLLMFSPSGR 53
                     689***************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.207161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-24281IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201155IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGRVKLMMKR LESSSNRKVT YSKRRSGILK KAKELSILCD IDIVLLMFSP SGRPTIFHGD  60
HRCIGDVIAK FAQLTPSRKD KKETGEPRGT KLLSCWTNIS RTENVEHLRN LEESLRKSIE  120
RIQIHKKHLR KNHFMSLKCT TTQVM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019839m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416569.22e-60agamous-like MADS-box protein AGL65
SwissprotQ7X9I06e-58AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLV4K9J11e-102V4K9J1_EUTSA; Uncharacterized protein
STRINGXP_006390423.11e-103(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-60AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]